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View Structure Prediction Details

Protein: CSLA9_ARATH
Organism: Arabidopsis thaliana
Length: 533 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSLA9_ARATH.

Description E-value Query
Range
Subject
Range
gi|110741538 - gi|110741538|dbj|BAE98718.1| hypothetical protein [Arabidopsis thaliana]
322.0 [0..1] [533..1]

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Predicted Domain #1
Region A:
Residues: [1-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELGDTTSVI PDSFMGYRDD ITMQMSMVLD QIRAPLIVPA LRLGVYICLT MSVMLFVERV  60
   61 YMGIVISLVK LFGRKPDKRF KYEPIKDDIE LGNSAYPMVL IQIPMFNERE VYQLSIGAAC 120
  121 GLSWPSDRIV IQVLDDSTDP TIKDLVEMEC SRWASKGVNI KYEIRDNRNG YKAGALKEGM 180
  181 KKSYVKSCDY VAIFDADFQP EADFLWRTVP YLLHNPKLAL VQARWKFVNS DECLMTRMQE 240
  241 MSLDYHFTVE QEVGSSTYAF FGFNGTAGIW RISALNEAGG WKDRTTVEDM DLAVRASLKG 300
  301 WKFLYLGSLK VKNELPSTFK AYRYQQHRWS CGPANLFRKM 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 2d7iA
Description: No description for 2d7iA was found.

Predicted Domain #2
Region A:
Residues: [341-533]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFEIMTNKNV TLWKKVHVIY SFFVVRKLVA HIVTFIFYCV ILPATVLVPE VTVPKWGAVY  60
   61 IPSVITLLNA VGTPRSLHLM VFWILFENVM SLHRTKATFI GLLEGGRVNE WIVTEKLGDV 120
  121 KAKSATKTSK KVIRFRFGDR IHVLELGVGM YLLFVGCYDA FFGKNHYYLY LFAQAIAFFI 180
  181 AGFGQIGTIV PNH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle