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View Structure Prediction Details

Protein: gi|18399910, gi|...
Organism: Arabidopsis thaliana
Length: 220 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18399910, gi|....

Description E-value Query
Range
Subject
Range
gi|15238069, gi|... - gi|7960735|emb|CAB92057.1| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase-like protein [Ar...
232.0 [0..1] [219..1]

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Predicted Domain #1
Region A:
Residues: [1-220]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTSNSVLF LSSDSLIHHH HHQPLHLSSS RSHSVSLPPN KRSNSLTLRC STNGDSTSTE  60
   61 KETPIELKFP AFPTVMDINQ IREILPHRFP FLLVDRVIEY TPGVSAVAIK NVTINDNFFP 120
  121 GHFPERPIMP GVLMIEAMAQ VGGIVMLQPE VGGSQDNFFF AGIDKVRFRK PVIAGDTLVM 180
  181 RMTLLKFQKR FGLAKMEGKA YVGGALVCEG EFMMVSAGSS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.69897
Match: 1u1zA
Description: The Structure of (3R)-hydroxyacyl-ACP dehydratase (FabZ)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
CoA hydrolase activity 1.75530090056705 bayes_pls_golite062009
catalytic activity 1.11649534052993 bayes_pls_golite062009
thiolester hydrolase activity 0.65794221902015 bayes_pls_golite062009
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity 0.57527342054578 bayes_pls_golite062009
3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity 0.57527342054578 bayes_pls_golite062009
acyl-CoA thioesterase activity 0.24094527143225 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle