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View Structure Prediction Details

Protein: gi|26450421, gi|...
Organism: Arabidopsis thaliana
Length: 116 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26450421, gi|....

Description E-value Query
Range
Subject
Range
LSM4_TOBAC - Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1
115.0 [0..1] [114..1]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLVRFLMKL NNETVSIELK NGTIVHGTIT GVDVSMNTHL KAVKLTLKGK NPVTLDHLSV  60
   61 RGNNIRYYIL PDSLNLETLL VEDTPRIKPK KPTAGKIPAG RGRGRGRGRG RGRGGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 1b34A
Description: D1 core SNRNP protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle