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View Structure Prediction Details

Protein: IGMT1_ARATH
Organism: Arabidopsis thaliana
Length: 373 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IGMT1_ARATH.

Description E-value Query
Range
Subject
Range
COMT1_POPTM - Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1
286.0 [0..9] [373..1]

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Predicted Domain #1
Region A:
Residues: [1-373]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYLFQETLS SNPKTPIVVD DDNELGLMAV RLANAAAFPM VLKAALELGV FDTLYAAASR  60
   61 TDSFLSPYEI ASKLPTTPRN PEAPVLLDRM LRLLASYSMV KCGKALSGKG ERVYRAEPIC 120
  121 RFFLKDNIQD IGSLASQVIV NFDSVFLNTW AQLKDVVLEG GDAFGRAHGG MKLFDYMGTD 180
  181 ERFSKLFNQT GFTIAVVKKA LEVYEGFKGV KVLVDVGGGV GNTLGVVTSK YPNIKGINFD 240
  241 LTCALAQAPS YPGVEHVAGD MFVDVPTGDA MILKRILHDW TDEDCVKILK NCWKSLPENG 300
  301 KVVVIELVTP DEAENGDINA NIAFDMDMLM FTQCSGGKER SRAEFEALAA ASGFTHCKFV 360
  361 CQAYHCWIIE FCK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.0
Match: 1kywA
Description: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 0.569065423404044 bayes_pls_golite062009
catalytic activity 0.486907672100804 bayes_pls_golite062009
methyltransferase activity 0.155495931533276 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.145822362574272 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle