YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: NDHO_ARATH
Organism: Arabidopsis thaliana
Length: 158 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDHO_ARATH.

Description E-value Query
Range
Subject
Range
gi|113534993, gi... - gi|57900289|dbj|BAD87122.1| unknown protein [Oryza sativa Japonica Group], gi|215764978|dbj|BAG86675...
gi|125529198 - gi|125529198|gb|EAY77312.1| hypothetical protein OsI_05288 [Oryza sativa Indica Group]
143.0 [0..65] [158..71]

Back

Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFSATVSQL SSLSTISSSL PISSRRLPHR SLPQFTVKAE AEKEKQSTQG KSDGEASPAA  60
   61 TKTPKTLPKK PVYSMKKGQI VRVEKEKYLN SINYLSVGHP PFYKGLDYIY EDRGEVLDLR 120
  121 VFETGEYALV GWVGIPTAPA WLPTDMLIKC EKLVYERM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle