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View Structure Prediction Details

Protein: RAGP1_ARATH
Organism: Arabidopsis thaliana
Length: 535 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAGP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|113547417, gi... - gi|115450691|ref|NP_001048946.1| Os03g0145000 [Oryza sativa (japonica cultivar-group)], gi|113547417...
266.0 [0..26] [534..73]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR  60
   61 IEDLAFATAN KHFQNE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.39794
Match: 2o6qA
Description: No description for 2o6qA was found.

Predicted Domain #2
Region A:
Residues: [77-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDGDGTSAVH VYAKESSKLM LDVIKRGPQE ESEVEVSKDG DVFFDISGGS RAFIEEEEAR  60
   61 DLLRPLADPR NSYTKIRFSN RSFGSEAAKF AASVLSSIKD QLTEVDLSDF VAGRPEAEAL 120
  121 EVMNMFSSAL EGSKLRYLNL SDNALGEKGI RAFASLINSQ HDLEELYLMN DGISEDAARA 180
  181 VRELLPSTDK IRVLQFHNNM TGDEGATAIA EIVRECPSLE DFRCSSTRIG SEGGVALAEA 240
  241 LEHCSHLKKL DLRDNMFGVE GGIALAKTLS VLTHLTEIYM SYLNLEDEGT EALSEALLKS 300
  301 APSLEVLELA GNDITVKSTG NLAACIASKQ SLAKLNLSEN ELKDEGTILI AKAVEGHDQL 360
  361 VEVDLSTNMI RRAGARALAQ TVVKKNTFKL LNINGNFISE EGIDEVNDMF KDCLDKLVPL 420
  421 DDNDPEGEDF EDEDEEEEGE DGNELESKLG SLKIKQGEE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.69897
Match: 1dfjI
Description: Ribonuclease inhibitor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle