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View Structure Prediction Details

Protein: CAB25_ARATH
Organism: Arabidopsis thaliana
Length: 238 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAB25_ARATH.

Description E-value Query
Range
Subject
Range
gi|46228363 - gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' ...
gi|66359288 - gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A'' subunit...
219.0 [0..27] [223..1679]

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Predicted Domain #1
Region A:
Residues: [1-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTSEGLASV DSWLYRQGFN VDSWLLSDTF SHDNDLLARA LHTTVTAPHT LTPSSAFFDS  60
   61 SAVSHPSSTN TLSSTVSGAS DPEIIGGGAK RKRNCLLTDG KAAKRRARAS KKSQTTFITA 120
  121 DPSNFRQMVQ QVTGAKYIDD SSSFGIFDPI VKPEPLRFVN KLPCGPSDRS TAVPMLDTSA 180
  181 FLSNHHQENL AVGNAFSGNS SSVGLPSGKP SATADPGGSA VEFDNYPTFP TLESWKVM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle