| Protein: | MBD8_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 524 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBD8_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
682.0 | [0..171] | [524..72] |
|
|
221.0 | [0..278] | [477..137] |
|
Region A: Residues: [1-278] |
1 11 21 31 41 51
| | | | | |
1 MDDGDLGNNH HNFLGGAGNR LSAESLPLID TRLLSQSELR ALSQCSSLSP SSSASLAASA 60
61 GGDDDLTPKI DRSVFNESAG SRKQTFLRLR LARHPQPPEE PPSPQRQRDD SSREEQTQVA 120
121 SLLRSLFNVD SNQSKEEEDE GEEELEDNEG QIHYNSYVYQ RPNLDSIQNV LIQGTSGNKI 180
181 KRKRGRPRKI RNPSEENEVL DLTGEASTYV FVDKTSSNLG MVSRVGSSGI SLDSNSVKRK 240
241 RGRPPKNKEE IMNLEKRDSA IVNISAFDKE ELVVNLEN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [279-416] |
1 11 21 31 41 51
| | | | | |
1 REGTIVDLSA LASVSEDPYE EELRRITVGL KTKEEILGFL EQLNGEWVNI GKKKKVVNAC 60
61 DYGGYLPRGW RLMLYIKRKG SNLLLACRRY ISPDGQQFET CKEVSTYLRS LLESPSKNQH 120
121 YYLQSDNKTL GQQPVIAN
|
| Detection Method: | |
| Confidence: | 1.02 |
| Match: | 1ub1A |
| Description: | Solution structure of the matrix attachment region-binding domain of chicken MeCP2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [417-524] |
1 11 21 31 41 51
| | | | | |
1 ESLLGNSDSM DSETMQYLES GRTSSEVFEE AKAVENGNEA DRVKTSLMQK DDNADFLNGV 60
61 EDNDDDMKKR DGNMENLATL SNSEMTKSLP TTTNELQQYF SSQINRVQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
