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View Structure Prediction Details

Protein: ODO2A_ARATH
Organism: Arabidopsis thaliana
Length: 464 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ODO2A_ARATH.

Description E-value Query
Range
Subject
Range
gi|4210332 - gi|4210332|emb|CAA11553.1| 2-oxoglutarate dehydrogenase E2 subunit [Arabidopsis thaliana]
459.0 [0..1] [464..1]

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Predicted Domain #1
Region A:
Residues: [1-91]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC  60
   61 PGCPDCSRTI INGYQGTALQ RWVRPFSSDS G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.045757
Match: 2qf7A
Description: No description for 2qf7A was found.

Predicted Domain #2
Region A:
Residues: [92-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVVEAVVPHM GESITDGTLA AFLKKPGDRV EADEAIAQIE TDKVTIDIAS PASGVIQEFL  60
   61 VKEGDTVEPG NKVARISTSA DAVSHVAPSE KAPEKPAPKP SPPAEKPKVE STKVAEKPKA 120
  121 PSPPPPPPSK QSAKEPQLPP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.0
Match: 1zy8K
Description: The crystal structure of dihydrolipoamide dehydrogenase and dihydrolipoamide dehydrogenase-binding protein (didomain) subcomplex of human pyruvate dehydrogenase complex.
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [232-464]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDRERRVPMT RLRKRVATRL KDSQNTFALL TTFNEVDMTN LMKLRSQYKD AFLEKHGVKL  60
   61 GLMSGFIKAA VSALQHQPVV NAVIDGDDII YRDYVDISIA VGTSKGLVVP VIRDADKMNF 120
  121 ADIEKTINGL AKKATEGTIS IDEMAGGSFT VSNGGVYGSL ISTPIINPPQ SAILGMHSIV 180
  181 QRPMVVGGSV VPRPMMYVAL TYDHRLIDGR EAVYFLRRIK DVVEDPQRLL LDI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.09691
Match: 1c4tA
Description: Dihydrolipoamide succinyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.985567717478902 bayes_pls_golite062009
transferase activity 0.65532722795675 bayes_pls_golite062009
transferase activity, transferring acyl groups 0.590907147191141 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 0.589573845516701 bayes_pls_golite062009
acyltransferase activity 0.58932324215015 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle