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View Structure Prediction Details

Protein: gi|25407944, gi|...
Organism: Arabidopsis thaliana
Length: 392 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25407944, gi|....

Description E-value Query
Range
Subject
Range
gi|28603726, gi|... - gi|6224887|gb|AAF05998.1|AF192332_1 pregnancy-associated glycoprotein-15 [Bos taurus], gi|28603726|r...
292.0 [0..1] [385..4]

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Predicted Domain #1
Region A:
Residues: [1-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLFLQIIT CSLFTTTASS PHGFTIDLIQ RRSNSSSSRL SKNQLQGASP YADTLFDYNI  60
   61 YLMKLQVGTP PFEIEAEIDT GSDLIWTQCM PCTNCYSQYA PIFDPSNSST FKEKRCNGNS 120
  121 CHYKIIYADT TYSKGTLATE TVTIHSTSGE PFVMPETTIG CGHNSSWFKP TFSGMVGLSW 180
  181 GPSSLITQMG GEYPGLMSYC FASQGTSKIN FGTNAIVAGD GVVSTTMFLT TAKPGLYYLN 240
  241 LDAVSVGDTH VETMGTTFHA LEGNIIIDSG TTLTYFPVSY CNLVREAVDH YVTAVRTADP 300
  301 TGNDMLCYYT DTIDIFPVIT MHFSGGADLV LDKYNMYIET ITRGTFCLAI ICNNPPQDAI 360
  361 FGNRAQNNFL VGYDSSSLLV SFSPTNCSAL WN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.69897
Match: 2psgA
Description: REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.01508543827677 bayes_pls_golite062009
hydrolase activity 0.77554493777157 bayes_pls_golite062009
peptidase activity 0.68518523369811 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.43925265235199 bayes_pls_golite062009
endopeptidase activity 0.43264884039584 bayes_pls_golite062009
aspartic-type endopeptidase activity 0.30585066730542 bayes_pls_golite062009
aspartic-type peptidase activity 0.30585066730542 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle