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View Structure Prediction Details

Protein: gi|11357280, gi|...
Organism: Arabidopsis thaliana
Length: 213 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11357280, gi|....

Description E-value Query
Range
Subject
Range
gi|13877521, gi|... - gi|17978805|gb|AAL47396.1| embryo-specific protein 3 (ATS3) [Arabidopsis thaliana], gi|13877521|gb|A...
269.0 [0..1] [213..1]

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Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFPSLSVSF LFFAFIFVTH AFDLSIIQMQ QGTCPYTVVV MTSCLSPEST RDQISIVFGD  60
   61 ADGNKVYAPK LGGLVRGPGG LGKCSTNTFQ VRGQCLNDPI CSLYINRNGP DGWVPESIEI 120
  121 YSEGSKSVKF DFSKSVPQLN TWYGHNNCNT TGRPSSPDLP PPHFPPEFPP ETPTTPPPPP 180
  181 PRPSAASRLG NGESVFLAFA IATAIAAMVR WSY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.0
Match: 2fnqA
Description: Insights from the X-ray crystal structure of coral 8R-lipoxygenase: calcium activation via A C2-like domain and a structural basis of product chirality
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle