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View Structure Prediction Details

Protein: LHCA3_ARATH
Organism: Arabidopsis thaliana
Length: 273 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LHCA3_ARATH.

Description E-value Query
Range
Subject
Range
CB2G_SOLLC - Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1
284.0 [0..1] [268..1]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAQALVSSS LTSSVQTARQ IFGSKPVASA SQKKSSFVVK AAATPPVKQG ANRPLWFASS  60
   61 QSLSYLDGSL PGDYGFDPLG LSDPEGTGGF IEPRWLAYGE IINGRFA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.42
Match: 1rwtA
Description: Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [108-273]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGAAGAIAP EILGKAGLIP AETALPWFQT GVIPPAGTYT YWADNYTLFV LEMALMGFAE  60
   61 HRRLQDWYNP GSMGKQYFLG LEKGLAGSGN PAYPGGPFFN PLGFGKDEKS LKELKLKEVK 120
  121 NGRLAMLAIL GYFIQGLVTG VGPYQNLLDH LADPVNNNVL TSLKFH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.09691
Match: 2o013
Description: No description for 2o013 was found.

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