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View Structure Prediction Details

Protein: NRT22_ARATH
Organism: Arabidopsis thaliana
Length: 522 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRT22_ARATH.

Description E-value Query
Range
Subject
Range
gi|48675349, gi|... - gi|48675349|dbj|BAD22822.1| nitrate transporter [Prunus persica], gi|39573544|dbj|BAD04063.1| high-a...
254.0 [0..5] [521..6]

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Predicted Domain #1
Region A:
Residues: [1-522]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSTDEPGSS MHGVTGREQS YAFSVDGSEP TNTKKKYNLP VDAEDKATVF KLFSFAKPHM  60
   61 RTFHLSWISF STCFVSTFAA APLIPIIREN LNLTKHDIGN AGVASVSGSI FSRLVMGAVC 120
  121 DLLGPRYGCA FLVMLSAPTV FSMSFVSDAA GFITVRFMIG FCLATFVSCQ YWMSTMFNSQ 180
  181 IIGLVNGTAA GWGNMGGGIT QLLMPIVYEI IRRCGSTAFT AWRIAFFVPG WLHIIMGILV 240
  241 LTLGQDLPGG NRAAMEKAGE VAKDKFGKIL WYAVTNYRTW IFVLLYGYSM GVELSTDNVI 300
  301 AEYFFDRFHL KLHTAGIIAA CFGMANFFAR PAGGWASDIA AKRFGMRGRL WTLWIIQTSG 360
  361 GLFCVWLGRA NTLVTAVVSM VLFSLGAQAA CGATFAIVPF VSRRALGIIS GLTGAGGNFG 420
  421 SGLTQLVFFS TSRFTTEEGL TWMGVMIVAC TLPVTLIHFP QWGSMFFPPS NDSVDATEHY 480
  481 YVGEYSKEEQ QIGMHLKSKL FADGAKTEGG SSVHKGNATN NA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.69897
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle