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View Structure Prediction Details

Protein: PUP16_ARATH
Organism: Arabidopsis thaliana
Length: 383 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUP16_ARATH.

Description E-value Query
Range
Subject
Range
gi|83767208 - gi|83767208|dbj|BAE57347.1| unnamed protein product [Aspergillus oryzae]
gi|169769759 - gi|169769759|ref|XP_001819349.1| hypothetical protein [Aspergillus oryzae RIB40]
193.0 [0..20] [383..167]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEFQGPEPR GQMMSENPRS LELNQRKWWI SVFICGFLIF AGDSLVMLLL NFFYVQDNRS  60
   61 ESDQDRQYKG TWTQALIQNA AFPILIPFFF ILSSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [96-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPNPETVSNQ TNNGWFRVLS LYVSLGVLVS VYSKLYALGK LYVGWGILLS TQLILTSLFS  60
   61 AFINRLKFNR WIIISIIFTL GADFFGGPAF AGTPNEDETD PYDIKAWLIL IFPTLAFSLS 120
  121 LCLMQLGFDK VLVKTKR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.77
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [233-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGNKKVFRMV LEMQICVSFI ATLICTVGLF ASGEFKELKG DSERFKKGKT YYILSLVGLA  60
   61 LSWQVWAVGL LGLVLLVSGL FADVVHMGAS PVVALLVVLA FDFMDDEFGW QRRGALLGAV 120
  121 LALASYFYSL HTKKKKEIAE LNKRENNNSE A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle