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View Structure Prediction Details

Protein: ERF39_ARATH
Organism: Arabidopsis thaliana
Length: 179 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERF39_ARATH.

Description E-value Query
Range
Subject
Range
gi|7488219 - gi|7488219|pir||T05800 probable transcription regulator M7J2.160 - Arabidopsis thaliana
178.0 [0..4] [178..20]
gi|71983373 - gi|71983373|gb|AAZ57434.1| CRT/DRE binding factor 1 [Iris lactea var. chinensis]
175.0 [0..2] [178..13]
gi|41351817 - gi|41351817|gb|AAS00621.1| DREB1 [Thellungiella salsuginea]
169.0 [0..8] [178..24]
gi|98980426 - gi|98980426|gb|AAY21899.2| C-repeat binding factor-like protein [Chorispora bungeana]
169.0 [0..4] [178..20]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDSSSHESQ RNLRSPVPEK TGKSSKTKNE QKGVSKQPNF RGVRMRQWGK WVSEIREPRK  60
   61 KSRIWLGTFS TPEMAARAHD VAALAIKGGS AHLNFPELA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1gccA
Description: GCC-box binding domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [100-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YHLPRPASAD PKDIQEAAAA AAAVDWKAPE SPSSTVTSSP VADDAFSDLP DLLLDVNDHN  60
   61 KNDGFWDSFP YEDPFFLENY 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.678 a.51.1 Cytochrome c oxidase subunit h
View Download 0.615 a.118.8 TPR-like
View Download 0.443 a.77.1 DEATH domain
View Download 0.443 a.77.1 DEATH domain
View Download 0.399 a.61.1 Retroviral matrix proteins
View Download 0.389 a.118.26 Description not found.
View Download 0.383 a.163.1 Crustacean CHH/MIH/GIH neurohormone
View Download 0.383 a.163.1 Crustacean CHH/MIH/GIH neurohormone
View Download 0.373 d.58.4 Dimeric alpha+beta barrel
View Download 0.345 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.340 a.4.5 "Winged helix" DNA-binding domain
View Download 0.295 a.4.1 Homeodomain-like
View Download 0.285 a.4.1 Homeodomain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle