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View Structure Prediction Details

Protein: AROD1_ARATH
Organism: Arabidopsis thaliana
Length: 392 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROD1_ARATH.

Description E-value Query
Range
Subject
Range
gi|20148399, gi|... - gi|20148399|gb|AAM10090.1| unknown protein [Arabidopsis thaliana], gi|14596233|gb|AAK68844.1| Unknow...
486.0 [0..1] [392..1]

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Predicted Domain #1
Region A:
Residues: [1-105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRCFPIWV CPQTTHHRSP LMGLAEFDAD KRRRFCLWEC SSSASQRAVT AIEGEIPFSR  60
   61 ELKKSSDELG LTQETQSLSF HRDLSMLPKP LTANSLYSSD GDDSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.69897
Match: 1ecmA
Description: Chorismate mutase domain of P-protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
chorismate mutase activity 3.78733095924257 bayes_pls_golite062009
catalytic activity 1.09506175640279 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [106-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRISFQGIPG AYSETAALKA FPNCETVPCE QFEAAFQAVE LWLVDKAVLP IENSVGGSIH  60
   61 RNYDLLLRHR LHIVQEVHLP VNHCLLGVPG VKKEDIKCVL SHPQALDQCV NSLNNLGIQR 120
  121 ISAKDTATAA QTVSSSGKID VGAIASVRAA NIYGLDILAE NIQDDVNNVT RFLILAREPM 180
  181 IPRTDRPYKT SIVFSLEEGP GVLFKALAVF ALRSINLSKI ESRPQRRRPL RVVDGSNNGS 240
  241 AKYFDYLFYI DFEASMADTR AQHALGHLQE FASFIRILGC YPMDLVR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.221849
Match: 2qmxA
Description: No description for 2qmxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle