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View Structure Prediction Details

Protein: gi|15242427, gi|...
Organism: Arabidopsis thaliana
Length: 1167 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|15242427, gi|....

Predicted Domain #1
Region A:
Residues: [1-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKECDIYK IINILSQLDS DLKKIPVSDK VISHKEQQGE PSEEKRSWWV RVRGSLKRIG  60
   61 KAKKEAFNNA SDSGGSQGGS RRSVQNIEED QKNEDLEIRK LQNDIRQMIA AFKNLTQFQT 120
  121 DMSKNLERDL RSTKLIAILQ KKNSFGSRSH VVKEIRRKVS ALKCQIPSLL HKQSSRKISI 180
  181 TDSQTAEEND EISETGIDIY LPGLHFSEKF KTSSAFEEVV EKFQGLDDFT QKLCLLSFAV 240
  241 FPENREVKRT MLMYWWIGEG FISCDDSENL VTRILDSFSD KKLLEPVEDE RKLLPSSYKM 300
  301 EPHVHSAVIY LAKEMDLFEL YNKNGKLIMK KSSKKKVCLV KGSSLLRDAK TSVM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.221849
Match: 1z6tA
Description: Structure of the apoptotic protease-activating factor 1 bound to ADP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [355-609]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPKTLQTVFN SSERYPDFTF KWFPLMDSLR VLYLGRWEQT AKRHIEVEST EFLKNMKSLK  60
   61 NLRLASFQGI SRIERLENSI CALPELVILD LKACYNLEVL PSDIGLFEKL IYLDVSECYM 120
  121 LDRMPKGIAK LSRLQVLKGF VISESDHENN CAVKHLVNLR KLSITVNKYS FKVESLMESL 180
  181 TGLQGLESLK IAWGACEEPN EAVESRETTN EKKENQGGLA TDKKLKDLME REDDQVQNYG 240
  241 QTSKEEKGNV EETGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.39794
Match: 2id5A
Description: No description for 2id5A was found.

Predicted Domain #3
Region A:
Residues: [610-793]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEDGDQGDGI NEEANLEDGK KHDEGKEERS LKSDEVVEEE KKTSPSEEAT EKFQNKPGDQ  60
   61 KGKSNVEGDG DKGKADLEEE KKQDEVEAEK SKSDEIVEGE KKPDDKSKVE KKGDGDKENA 120
  121 DLDEGKKRDE VEAKKSESGK VVEGDGKESP PQESIDTIQN MTDDQTKVEK EGDRDKGKVD 180
  181 PEEG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [794-1167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKHDEVEGGI WKSDNGVEGV DKASPSREST DAIENKPDDH QRGDKQEEKG DGEKEKVNLE  60
   61 EWKKHDEIKE ESSKQDNVTG GDVKKSPPKE SKDTMESKRD DQKENSKVQE KGDVDKGKAA 120
  121 DLDEGKKEND VKAESSKSDK VIEGDEEKNP PQKSKDIIQS KPDDHREISK VQEKVDGEKN 180
  181 GDDLKKLDGG GEAKTQKSRK TTKFGKNVSD HPKRDNTMAE DIHETQSPSR KSKSSKAKWL 240
  241 TGRGNQTKKW GIGWQEDPVV DDTYTLPSNL KKLELECFPE TKPPSWLNPK DLKNLKKLSI 300
  301 KGGKLSRIGD ESRITEDKWD VEILRLKYLH EFKVEWRDLQ TLFPKMTLLE KYKCPKIAFC 360
  361 PTDGNGVWTS SPNM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle