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View Structure Prediction Details

Protein: gi|7484795, gi|6...
Organism: Arabidopsis thaliana
Length: 394 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7484795, gi|6....

Description E-value Query
Range
Subject
Range
gi|68441125 - gi|68441125|ref|XP_687750.1| PREDICTED: similar to very large inducible GTPase 1, partial [Danio rer...
214.0 [0..7] [393..390]

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Predicted Domain #1
Region A:
Residues: [1-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSESLPEDK PVLEVALTEL PMVAESLPED GSGLEVTCDL RLEHKPARTL LLVGRSGNGK  60
   61 SATGNSILGR KAFKSKGRAS GVTTACELQS STLPNGQIIN VIDTPGLFSL SPSTEFTCRE 120
  121 ILRCFSLTKE GIDAVLLVFS LK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.154902
Match: 1h65A
Description: Chloroplast protein translocon GTPase Toc34
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [143-394]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRLTEEEKSA LFALKILFGS KIVDYMIVVF TNEDSLEDDG DTFEEYLEDS PDFKEILEPC  60
   61 NDRKVLFRNR SNAPVSQKAK QVQELLNYVE EIARLNGKSY MADLSHEIRE NETAFQIKQQ 120
  121 EILEMKGLYT RQEMLQMKKD MEKSFENQQL RQMMERVETE LRETKERLEQ QLKEEKSARL 180
  181 ELEKRAKEVE KRSSDVVKEL NDEQAKRLES ESRAKEAVKQ SNGVVENLNK ELARIKQMAT 240
  241 DLQKSKQWCI IM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.30103
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle