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View Structure Prediction Details

Protein: gi|25404375, gi|...
Organism: Arabidopsis thaliana
Length: 205 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25404375, gi|....

Description E-value Query
Range
Subject
Range
COMT1_OCIBA - Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1
186.0 [0..1] [205..158]

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Predicted Domain #1
Region A:
Residues: [1-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVFELIGSN EQFAEMFNRT MSEASTLIMK KVLEVYKGFE DVNTLVDVGG GIGTIIGQVT  60
   61 SKYPHIKGIN FDLASVLAHA PFNKGVEHVS GDMFKEIPKG DAIFMKWILH DWTDEDCVKI 120
  121 LKNYWKSLPE KGKVIIVEVV TPEEPKINDI SSNIVFGMDM LMLAVSSGGK ERSLSQFETL 180
  181 ASDSGFLRCE IICHAFSYSV IELHK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.69897
Match: 1kywA
Description: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.723277178398499 bayes_pls_golite062009
transferase activity 0.64512166557639 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.54403439349476 bayes_pls_golite062009
methyltransferase activity 0.54389223881989 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle