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View Structure Prediction Details

Protein: RH37_ARATH
Organism: Arabidopsis thaliana
Length: 633 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH37_ARATH.

Description E-value Query
Range
Subject
Range
gi|28393424 - gi|28393424|gb|AAO42134.1| putative DEAD/DEAH box RNA helicase [Arabidopsis thaliana]
483.0 [0..1] [633..1]

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Predicted Domain #1
Region A:
Residues: [1-158]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP  60
   61 SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG WNNRSGGWDR REREVNPFEN 120
  121 DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [159-558]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTFAEIDLGE ALNLNIRRCK YVKPTPVQRH AIPILLEGRD LMACAQTGSG KTAAFCFPII  60
   61 SGIMKDQHVQ RPRGSRTVYP LAVILSPTRE LASQIHDEAK KFSYQTGVKV VVAYGGTPIN 120
  121 QQLRELERGV DILVATPGRL NDLLERARVS MQMIRFLALD EADRMLDMGF EPQIRKIVEQ 180
  181 MDMPPRGVRQ TLLFSATFPR EIQRLAADFL ANYIFLAVGR VGSSTDLIVQ RVEFVLDSDK 240
  241 RSHLMDLLHA QRENGIQGKQ ALTLVFVETK RGADSLENWL CINGFPATSI HGDRTQQERE 300
  301 VALKAFKSGR TPILVATDVA ARGLDIPHVA HVVNFDLPND IDDYVHRIGR TGRAGKSGLA 360
  361 TAFFNDGNTS LARPLAELMQ EANQEVPEWL TRYASRSSFG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 100.0
Match: 2i4iA
Description: No description for 2i4iA was found.

Predicted Domain #3
Region A:
Residues: [559-633]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGKNRRSGGR FGGRDFRREG SFGSGRGGYG GGGGGYGGGG GYGGGGGYGG GGGYGGGYGG  60
   61 ASSGGYGGEP PSAWD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.45
Match: 1jchA
Description: Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle