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View Structure Prediction Details

Protein: AKH1_ARATH
Organism: Arabidopsis thaliana
Length: 911 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for AKH1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVVSLAKVV TSPAVAGDLA VRVPFIYGKR LVSNRVSFGK LRRRSCIGQC VRSELQSPRV  60
   61 LGSVTDLALD NSVENGHLPK G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-559]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSWAVHKFGG TCVGNSERIK DVAAVVVKDD SERKLVVVSA MSKVTDMMYD LIHRAESRDD  60
   61 SYLSALSGVL EKHRATAVDL LDGDELSSFL ARLNDDINNL KAMLRAIYIA GHATESFSDF 120
  121 VVGHGELWSA QMLAAVVRKS GLDCTWMDAR DVLVVIPTSS NQVDPDFVES EKRLEKWFTQ 180
  181 NSAKIIIATG FIASTPQNIP TTLKRDGSDF SAAIMSALFR SHQLTIWTDV DGVYSADPRK 240
  241 VSEAVVLKTL SYQEAWEMSY FGANVLHPRT IIPVMKYDIP IVIRNIFNLS APGTMICRQI 300
  301 DDEDGFKLDA PVKGFATIDN LALVNVEGTG MAGVPGTASA IFSAVKEVGA NVIMISQASS 360
  361 EHSVCFAVPE KEVKAVSEAL NSRFRQALAG GRLSQIEIIP NCSILAAVGQ KMASTPGVSA 420
  421 TFFNALAKAN INIRAIAQGC SEFNITVVVK REDCIRALRA VHSRFYLSRT TLAVGIIG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 114.0
Match: 3c1mA
Description: No description for 3c1mA was found.

Predicted Domain #3
Region A:
Residues: [560-911]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGLIGGTLLD QIRDQAAVLK EEFKIDLRVI GITGSSKMLM SESGIDLSRW RELMKEEGEK  60
   61 ADMEKFTQYV KGNHFIPNSV MVDCTADADI ASCYYDWLLR GIHVVTPNKK ANSGPLDQYL 120
  121 KIRDLQRKSY THYFYEATVG AGLPIISTLR GLLETGDKIL RIEGIFSGTL SYLFNNFVGT 180
  181 RSFSEVVAEA KQAGFTEPDP RDDLSGTDVA RKVTILARES GLKLDLEGLP VQNLVPKPLQ 240
  241 ACASAEEFME KLPQFDEELS KQREEAEAAG EVLRYVGVVD AVEKKGTVEL KRYKKDHPFA 300
  301 QLSGADNIIA FTTKRYKEQP LIVRGPGAGA QVTAGGIFSD ILRLAFYLGA PS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.0
Match: 1ebfA
Description: Homoserine dehydrogenase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle