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View Structure Prediction Details

Protein: DEAH2_ARATH
Organism: Arabidopsis thaliana
Length: 726 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEAH2_ARATH.

Description E-value Query
Range
Subject
Range
PRP43_ARATH - Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 OS=Arabidopsis thaliana GN=At2g47...
594.0 [0..1] [725..1]

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Predicted Domain #1
Region A:
Residues: [1-60]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 63.69897
Match: 2j0qA
Description: No description for 2j0qA was found.

Predicted Domain #2
Region A:
Residues: [61-575]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID AVDAETSDKR RKWLVGCTQP  60
   61 RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER 120
  121 YKVIILDEAH ERTLATDVLF GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP 180
  181 GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG 240
  241 NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI 300
  301 VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA GRTRPGKCFR LYTEKSFNND 360
  361 LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG 420
  421 NLTKTGEIMS EFPLDPQMAK MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA 480
  481 KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 2qeqA
Description: No description for 2qeqA was found.

Predicted Domain #3
Region A:
Residues: [576-726]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INNRAMKSAD NVRQQLVRIM SRFNLKMCST DFNSRDYYIN IRKAMLAGYF MQVAHLERTG  60
   61 HYLTVKDNQV VHLHPSNCLD HKPEWVIYNE YVLTSRNFIR TVTDIRGEWL VDVASHYYDL 120
  121 SNFPNCEAKR VIEKLYKKRE REKEESKKNR K

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.366532
Match: PF07717.7
Description: No description for PF07717.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle