YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20197782, gi\|...
Organism:	Arabidopsis thaliana
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20197782, gi|....

Description	E-value	Query Range	Subject Range
gi\|29747871, gi\|... - gi\|74148296\|dbj\|BAE36302.1\| unnamed protein product [Mus musculus], gi\|29747871\|gb\|AAH50750.1\| Citra...	73.0	[0..43]	[76..45]
CISY_RAT - Citrate synthase, mitochondrial OS=Rattus norvegicus GN=Cs PE=1 SV=1	73.0	[0..43]	[76..45]
CS - citrate synthase	73.0	[0..43]	[76..45]
gi\|114644121 - gi\|114644121\|ref\|XP_001153202.1\| PREDICTED: citrate synthase [Pan troglodytes]	73.0	[0..43]	[76..45]
gi\|109097119 - gi\|109097119\|ref\|XP_001098147.1\| PREDICTED: similar to citrate synthase precursor, isoform a [Macaca...	73.0	[0..43]	[76..200]
gi\|73968367 - gi\|73968367\|ref\|XP_531634.2\| PREDICTED: similar to citrate synthase [Canis familiaris]	73.0	[0..43]	[76..45]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFRHLIIPF NLNNNRGRFH VVIKLFSLYS RETSYTNTTF NFQDRSKKLK LKHGKVPVGN  60
   61 ITVDMVLGGM RGMTGLHNRN LIA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2ctsA
Description:	CRYSTALLOGRAPHIC REFINEMENT AND ATOMIC MODELS OF TWO DIFFERENT FORMS OF CITRATE SYNTHASE AT 2.7 AND 1.7 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits