YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: NRT24_ARATH
Organism: Arabidopsis thaliana
Length: 527 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRT24_ARATH.

Description E-value Query
Range
Subject
Range
gi|30387023 - gi|30387023|emb|CAD89798.1| high affinity nitrate transporter protein [Nicotiana tabacum]
271.0 [0..1] [523..1]

Back

Predicted Domain #1
Region A:
Residues: [1-527]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP  60
   61 HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV GNAGVASVSG SIFSRLVMGA 120
  121 VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN 180
  181 GQIIGLVNGT AAGWGNMGGG VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI 240
  241 LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN 300
  301 VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT 360
  361 LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII PFISRRSLGI ISGLTGAGGN 420
  421 FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE 480
  481 EYYYMKEWTE TEKRKGMHEG SLKFAVNSRS ERGRRVASAP SPPPEHV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.0
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle