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View Structure Prediction Details

Protein: AROD3_ARATH
Organism: Arabidopsis thaliana
Length: 424 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROD3_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593283 - gi|21593283|gb|AAM65232.1| putative chorismate mutase/prephenate dehydratase [Arabidopsis thaliana]
429.0 [0..1] [408..1]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLLPSHTP ATVTTAARRR HVIHCAGKRS DSFSINSSSS DWQSSCAILS SKVNSQEQSE  60
   61 SLSSNSNGSS SYHVSAVNGH NNGAGVSDLN LVPFNNNQSI QSKKPLSISD LSPAPMH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.522879
Match: 1ecmA
Description: Chorismate mutase domain of P-protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
chorismate mutase activity 3.78733095924257 bayes_pls_golite062009
catalytic activity 1.09506175640279 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [118-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSNLRVAYQG VPGAYSEAAA GKAYPNCQAI PCDQFEVAFQ AVELWIADRA VLPVENSLGG  60
   61 SIHRNYDLLL RHRLHIVGEV QLPVHHCLIA LPGVRKEFLT RVISHPQGLA QCEHTLTKLG 120
  121 LNVAREAVDD TAGAAEFIAA NNIRDTAAIA SARAAEIYGL EILEDGIQDD ASNVTRFVML 180
  181 AREPIIPRTD RPFKTSIVFA HEKGTCVLFK VLSAFAFRNI SLTKIESRPN HNVPIRLVDE 240
  241 ANVGTAKHFE YMFYIDFEAS MAESRAQNAL SEVQEFTSFL RVLGSYPMDM TSWSPSSSSS 300
  301 SSSTFSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.69897
Match: 2qmxA
Description: No description for 2qmxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle