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View Structure Prediction Details

Protein: gi|20260048, gi|...
Organism: Arabidopsis thaliana
Length: 265 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20260048, gi|....

Description E-value Query
Range
Subject
Range
CB21_GOSHI - Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2
371.0 [0..1] [265..1]

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Predicted Domain #1
Region A:
Residues: [1-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSAIQQSS FAGQTALKPS SDLIQKVGVL GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP  60
   61 FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI HSRWAMLGAL GCTFPEILSK 120
  121 NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP 180
  181 LGEGLDPLYP GGAFDPLNLA EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE 240
  241 NLFDHLADPV ANNAWSYATN FVPGK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.221849
Match: 1rwtA
Description: Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle