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View Structure Prediction Details

Protein: gi|12324498, gi|...
Organism: Arabidopsis thaliana
Length: 336 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12324498, gi|....

Description E-value Query
Range
Subject
Range
gi|116333398, gi... - gi|116333398|ref|YP_794925.1| GTPase [Lactobacillus brevis ATCC 367], gi|116098745|gb|ABJ63894.1| GT...
205.0 [0..38] [327..11]

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Predicted Domain #1
Region A:
Residues: [1-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDQNTTDR WELPSASEPV KNVDRWELPS ASEPVKNVVL VGRTGNGKSA TGNSIIGRKV  60
   61 FESKYQAVGV TTRCKTFRAV TPDGPIINVI DTPGLFDLAV SAEFISKEIV NCLILAREGL 120
  121 HAVVLVLSLS TRISQEEENA LCTLQMLFGG KIVDYLIVVF TCGDMLEDRN MTLEDYLSNG 180
  181 CPEFLKNVLR LCGGRRVVFD NRTKDEGVKA KQVQQLLVHV AAIEKETGGN PFTDTMHRRI 240
  241 QEEAARVKRE EKEIEEKNIA DEEKAALKKQ LDMSYSQNMN MMALMMERIF KETAAANERQ 300
  301 MNMMKDFMEI SIIGNDAHRK RAEEKQAEKK QECNIL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.154902
Match: 1egaA
Description: GTPase Era, N-terminal domain; GTPase Era C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleoside-triphosphatase activity 0.166100211611062 bayes_pls_golite062009
pyrophosphatase activity 0.159702441149605 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 0.149170905385965 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 0.147838751017739 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle