YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MCM2_ARATH
Organism: Arabidopsis thaliana
Length: 936 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for MCM2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGENSDNEP SSPASPSSAG FNTDQLPIST SQNSENFSDE EEAAVDTQVI RDEPDEAEDE  60
   61 EEEEGEDLFN DTFMNDYRKM DENDQYESNG IDDSVDDERD LGQAMLDRRA ADADLDAREN 120
  121 RLANRKLPHL LHDNDSDDWN YRPSKRSRTT VPPRGNGGDP DGNPPSSPGV SQPDISMTDQ 180
  181 TDDYQDEDDN DDEAEFEMYR IQGTLREW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [209-429]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VMRDEVRRFI AKKFKDFLLT YVKPKNENGD IEYVRLINEM VSANKCSLEI DYKEFIHVHP  60
   61 NIAIWLADAP QPVLEVMEEV SEKVIFDLHP NYKNIHTKIY VRVTNLPVND QIRNIRQIHL 120
  121 NTMIRIGGVV TRRSGVFPQL QQVKYDCNKC GAVLGPFFQN SYSEVKVGSC SECQSKGPFT 180
  181 VNVEQTIYRN YQKLTIQESP GTVPAGRLPR HKEVILLNDL I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.39794
Match: 2vl6A
Description: No description for 2vl6A was found.

Predicted Domain #3
Region A:
Residues: [430-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DCARPGEEIE VTGIYTNNFD LSLNTKNGFP VFATVVEANY VTKKQDLFSA YKLTQEDKTQ  60
   61 IEELSKDPRI VERIIKSIAP SIY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.69897
Match: 1ny5A
Description: Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [513-936]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GHEDIKTALA LAMFGGQEKN IKGKHRLRGD INVLLLGDPG TAKSQFLKYV EKTGQRAVYT  60
   61 TGKGASAVGL TAAVHKDPVT REWTLEGGAL VLADRGICLI DEFDKMNDQD RVSIHEAMEQ 120
  121 QSISISKAGI VTSLQARCSV IAAANPVGGR YDSSKSFAQN VELTDPILSR FDILCVVKDV 180
  181 VDPVTDEMLA EFVVNSHFKS QPKGGKMEDS DPEDGIQGSS GSTDPEVLPQ NLLKKYLTYS 240
  241 KLYVFPKLGE LDAKKLETVY ANLRRESMNG QGVSIATRHL ESMIRMSEAH ARMHLRQYVT 300
  301 EEDVNMAIRV LLDSFISTQK FGVQRTLRES FKRYITYKKD FNSLLLVLLK ELVKNALKFE 360
  361 EIISGSNSGL PTIEVKIEEL QTKAKEYDIA DLRPFFSSTD FSKAHFELDH GRGMIKCPKR 420
  421 LITW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.045757
Match: 2r44A
Description: No description for 2r44A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle