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View Structure Prediction Details

Protein: gi|15232843, gi|...
Organism: Arabidopsis thaliana
Length: 219 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15232843, gi|....

Description E-value Query
Range
Subject
Range
gi|18414504, gi|... - gi|90093272|gb|ABD85149.1| At5g04250 [Arabidopsis thaliana], gi|62320580|dbj|BAD95211.1| hypothetica...
200.0 [0..8] [219..136]

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Predicted Domain #1
Region A:
Residues: [1-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSSSSTSW SSKKDTEDDR MIAFMLSEEY SKLDGAVGRR LSNLAPVPHV PRINCYIPNL  60
   61 NDATLDHQRL LQRLNVYGLC ELKVSGDGNC QFRALSDQLY RSPEYHKQVR REVVKQLKEC 120
  121 RSMYESYVPM KYKRYYKKMG KFGEWGDHIT LQAAADRFAA KICLLTSFRD TCFIEIIPQY 180
  181 QAPKGVLWLS FWSEVHYNSL YDIQAAPVQH KPKRKHWLF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.221849
Match: 1tffA
Description: Structure of Otubain-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.529663942126259 bayes_pls_golite062009
hydrolase activity 0.16837900182603 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle