YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18410226, gi\|...
Organism:	Arabidopsis thaliana
Length:	1214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18410226, gi|....

Description	E-value	Query Range	Subject Range
gi\|114663425 - gi\|114663425\|ref\|XP_511081.2\| PREDICTED: similar to KIAA0017 protein [Pan troglodytes]	1309.0	[0..1]	[1213..67]
gi\|40788938 - gi\|40788938\|dbj\|BAA32662.2\| KIAA0017 protein [Homo sapiens]	1301.0	[0..1]	[1213..37]
gi\|73957045 - gi\|73957045\|ref\|XP_536791.2\| PREDICTED: similar to splicing factor 3b, subunit 3 isoform 1 [Canis fa... gi\|149699332 - gi\|149699332\|ref\|XP_001500880.1\| PREDICTED: similar to Splicing factor 3B subunit 3 (Spliceosome-ass...	1297.0	[0..1]	[1213..1]
tr\|G3HAF4\|G3HAF4... - Splicing factor 3B subunit 3 OS=Cricetulus griseus GN=I79_007403 PE=4 SV=1 tr\|E9PT66\|E9PT66_RAT - Protein Sf3b3 OS=Rattus norvegicus GN=Sf3b3 PE=4 SV=2 SF3B3_MOUSE - Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=1 SV=1	1296.0	[0..1]	[1213..1]
SF3B3_PONAB - Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1 SF3B3_PONPY - Splicing factor 3B subunit 3 - Pongo pygmaeus (Orangutan)	1290.0	[0..1]	[1213..1]
SF3B3_DANRE - Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1	1287.0	[0..1]	[1213..1]

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Predicted Domain #1

Region A:
Residues: [1-1214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLYSLTLQQ ATGIVCAING NFSGGKTQEI AVARGKILDL LRPDENGKIQ TIHSVEVFGA  60
   61 IRSLAQFRLT GAQKDYIVVG SDSGRIVILE YNKEKNVFDK VHQETFGKSG CRRIVPGQYV 120
  121 AVDPKGRAVM IGACEKQKLV YVLNRDTTAR LTISSPLEAH KSHTICYSLC GVDCGFDNPI 180
  181 FAAIELDYSE ADQDPTGQAA SEAQKHLTFY ELDLGLNHVS RKWSNPVDNG ANMLVTVPGG 240
  241 ADGPSGVLVC AENFVIYMNQ GHPDVRAVIP RRTDLPAERG VLVVSAAVHK QKTMFFFLIQ 300
  301 TEYGDVFKVT LDHNGDHVSE LKVKYFDTIP VASSICVLKL GFLFSASEFG NHGLYQFQAI 360
  361 GEEPDVESSS SNLMETEEGF QPVFFQPRRL KNLVRIDQVE SLMPLMDMKV LNIFEEETPQ 420
  421 IFSLCGRGPR SSLRILRPGL AITEMAVSQL PGQPSAVWTV KKNVSDEFDA YIVVSFTNAT 480
  481 LVLSIGEQVE EVNDSGFLDT TPSLAVSLIG DDSLMQVHPN GIRHIREDGR INEWRTPGKR 540
  541 SIVKVGYNRL QVVIALSGGE LIYFEADMTG QLMEVEKHEM SGDVACLDIA PVPEGRKRSR 600
  601 FLAVGSYDNT VRILSLDPDD CLQILSVQSV SSAPESLLFL EVQASIGGDD GADHPANLFL 660
  661 NSGLQNGVLF RTVVDMVTGQ LSDSRSRFLG LKPPKLFSIS VRGRSAMLCL SSRPWLGYIH 720
  721 RGHFHLTPLS YETLEFAAPF SSDQCAEGVV SVAGDALRIF MIDRLGETFN ETVVPLRYTP 780
  781 RKFVLHPKRK LLVIIESDQG AFTAEEREAA RKECFEAGGV GENGNGNADQ MENGADDEDK 840
  841 EDPLSDEQYG YPKAESEKWV SCIRVLDPKT ATTTCLLELQ DNEAAYSVCT VNFHDKEYGT 900
  901 LLAVGTVKGM QFWPKKNLVA GFIHIYRFVE DGKSLELLHK TQVEGVPLAL CQFQGRLLAG 960
  961 IGPVLRLYDL GKKRLLRKCE NKLFPNTIIS IQTYRDRIYV GDIQESFHYC KYRRDENQLY1020
 1021 IFADDCVPRW LTASHHVDFD TMAGADKFGN VYFVRLPQDL SEEIEEDPTG GKIKWEQGKL1080
 1081 NGAPNKVDEI VQFHVGDVVT CLQKASMIPG GSESIMYGTV MGSIGALHAF TSRDDVDFFS1140
 1141 HLEMHMRQEY PPLCGRDHMA YRSAYFPVKD VIDGDLCEQF PTLPMDLQRK IADELDRTPA1200
 1201 EILKKLEDAR NKII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	3e0cA
Description:	No description for 3e0cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits