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View Structure Prediction Details

Protein: ALFL3_ARATH
Organism: Arabidopsis thaliana
Length: 250 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ALFL3_ARATH.

Description E-value Query
Range
Subject
Range
ALFL4_ORYSJ - PHD finger protein ALFIN-LIKE 4 OS=Oryza sativa subsp. japonica GN=Os04g0444900 PE=2 SV=2
292.0 [0..1] [249..1]
gi|116310224 - gi|116310224|emb|CAH67233.1| OSIGBa0140O07.1 [Oryza sativa (indica cultivar-group)]
291.0 [0..1] [249..1]
gi|75214624 - gi|75214624|gb|ABA18096.1| PHD finger/nucleic acid binding protein [Olimarabidopsis pumila]
290.0 [0..1] [250..1]
gi|115394650 - gi|115394650|gb|ABI97241.1| PHD2 [Glycine max]
285.0 [0..1] [249..1]
ALFIN_MEDSA - PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1
282.0 [0..1] [249..1]
ALFL5_ARATH - PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1
281.0 [0..1] [249..1]

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Predicted Domain #1
Region A:
Residues: [1-115]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGAALYNP RTVEEVFKDF KGRRTAIVKA LTTDVQEFYQ QCDPEKENLC LYGLPNEEWE  60
   61 VNLPAEEVPP ELPEPALGIN FARDGLSEKE WLSLVAIHSD AWLLSVSFYF GSRFS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [116-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHKEERKRLF NMINDVPTIF EVVTGMAKAK DKSSAANQNG NKSKSNSKVR TSEGKSSKTK  60
   61 QPKEEDEEID EDDED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [191-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DHGETLCGAC GDSDGADEFW ICCDLCEKWF HGKCVKITPA RAEHIKQYKC PSCSNKRARA  60
   61 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.09691
Match: 1we9A
Description: Solution structure of PHD domain in nucleic acid binding protein-like NP_197993
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle