YRC Public Data Repository - Protein Structure Prediction

Protein:	NUG2_ARATH
Organism:	Arabidopsis thaliana
Length:	576 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUG2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|73976835 - gi\|73976835\|ref\|XP_532556.2\| PREDICTED: similar to Nucleolar GTP-binding protein 2 (Autoantigen NGP-...	348.0	[0..1]	[575..1]
gi\|50759744 - gi\|50759744\|ref\|XP_417761.1\| PREDICTED: similar to nucleolar GTPase [Gallus gallus]	348.0	[0..1]	[471..67]
gi\|95769512 - gi\|95769512\|gb\|ABF57441.1\| guanine nucleotide binding protein-like 2 (nucleolar) [Bos taurus]	347.0	[0..1]	[575..1]
gi\|74186961 - gi\|74186961\|dbj\|BAE20521.1\| unnamed protein product [Mus musculus]	344.0	[0..1]	[526..1]
gi\|71043774, gi\|... - gi\|71043774\|ref\|NP_001020907.1\| guanine nucleotide binding protein-like 2 (nucleolar) [Rattus norveg...	342.0	[0..1]	[528..1]
GNL2 - guanine nucleotide binding protein-like 2 (nucleolar)	341.0	[0..1]	[528..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKEKKANV SGKPKHSLDA NRADGKKKTT ETRSKSTVNR LKMYKTRPKR NAGGKILSNE  60
   61 YQSKELPNSR IAPDRRWFGN TRVVNQKELE YFREELQTKM SSNYNVILKE RKLPMSLLTD 120
  121 NKKQSRVHLL D

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.142668
Match:	PF08153.3
Description:	No description for PF08153.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.351	N/A	N/A	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.351	N/A	N/A	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.291	N/A	N/A	a.118.26	Description not found.
View	Download	0.247	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.247	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.212	N/A	N/A	d.73.1	RuBisCO, small subunit

Predicted Domain #2

Region A:
Residues: [132-576]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPFQDAFGR KTKRKRPKLV ASDYEALVKK AAESQDAFEE KNGAGPSGEG GEEEDGFRDL  60
   61 VRHTMFEKGQ SKRIWGELYK VIDSSDVIVQ VIDARDPQGT RCHHLEKTLK EHHKHKHMIL 120
  121 LLNKCDLVPA WATKGWLRVL SKEYPTLAFH ASVNKSFGKG SLLSVLRQFA RLKSDKQAIS 180
  181 VGFVGYPNVG KSSVINTLRT KNVCKVAPIP GETKVWQYIT LTKRIFLIDC PGVVYQSRDT 240
  241 ETDIVLKGVV RVTNLEDASE HIGEVLRRVK KEHLQRAYKI KDWEDDHDFL LQLCKSSGKL 300
  301 LKGGEPDLMT GAKMILHDWQ RGRIPFFVPP PKLDNVASES EVIVPGIDKE AIADNSQAAA 360
  361 ALKAIAGIMS TQQQKDVPVQ RDFYDEKDLK DDKKAKESTE TDAENGTDAE EDEDAVSEDG 420
  421 VESDSDADED AVSENDEEDE SDSAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits