YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|21553425, gi|...
Organism: Arabidopsis thaliana
Length: 142 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21553425, gi|....

Description E-value Query
Range
Subject
Range
gi|89158857, gi|... - gi|89211551|ref|ZP_01189911.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii...
146.0 [0..4] [140..161]

Back

Predicted Domain #1
Region A:
Residues: [1-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKDAKAGGK GKGKQASGSE EAPSKGKGKA GKAADGLGTC TYVKARHVLC EKQGKINEAY  60
   61 KKLQDGWLSN GDKVPPAEFA KIAAEYSECP SGKKGGDLGW FPRGKMAGPF QDVAFNTPVG 120
  121 VTSAPFKSTH GYHIILSEGR KN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.69897
Match: 1eq3A
Description: Parvulin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
peptidyl-prolyl cis-trans isomerase activity 4.4182664267098 bayes_pls_golite062009
cis-trans isomerase activity 4.33661522951196 bayes_pls_golite062009
isomerase activity 2.83057106437196 bayes_pls_golite062009
macrolide binding 1.34183721806994 bayes_pls_golite062009
catalytic activity 1.25572252987503 bayes_pls_golite062009
FK506 binding 1.11705415888427 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle