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View Structure Prediction Details

Protein: NGA2_ARATH
Organism: Arabidopsis thaliana
Length: 299 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NGA2_ARATH.

Description E-value Query
Range
Subject
Range
gi|26450371 - gi|26450371|dbj|BAC42301.1| putative RAV [Arabidopsis thaliana]
340.0 [0..1] [299..1]

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Predicted Domain #1
Region A:
Residues: [1-133]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQEDKEKPI EEASSSMERE HMFDKVVTPS DVGKLNRLVI PKQHAERYFP LDNSTTNDSN  60
   61 KGLLLNFEDR SGNSWRFRYS YWNSSQSYVM TKGWSRFVKD KKLDAGDIVS FQRDSCNKDK 120
  121 LYIDWRRRPK IPD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.30103
Match: 1widA
Description: Solution Structure of the B3 DNA-Binding Domain of RAV1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [134-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHHQQFAGAM FPRFYTFPHP QMPTNYETHN LYHRFHQRDL GIGYYVRSME RSHPTAVIES  60
   61 VPVMMQRRAQ VASMASRGEK RLRLFGVDME CGGGGGSVNS TEEESSSSGG SIPRGRVSMV 120
  121 GAGSLLQLRL VSSDDESLVA MEAASLEDHH FFTKKGKPSL SFDLDR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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