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View Structure Prediction Details

Protein: gi|15237609, gi|...
Organism: Arabidopsis thaliana
Length: 356 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15237609, gi|....

Description E-value Query
Range
Subject
Range
NC100_ARATH - NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1
279.0 [0..3] [330..13]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKTNLAPGF RFHPTDVELV RYYLKRKVMG KKFQVDAIAE VDIYKFEPPD LPDKSCLGTG  60
   61 DLKWYFFCPR EKKYPKGGKA NRSTECGYWK TTGRDRDVSY NDEVTGKIRT LIYHYGKIPR 120
  121 GDRTDWVIHE YRLEDKVLAQ KNVPQDTYVL CVLFKKNGLG PRHGSQYGAP FKEEDWSD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.69897
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [179-356]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEEEYTQNHL VAGPSKETSL AAKASHSYAP KDGLTGVISE SCVSDVPPLT ATVLPPLTSD  60
   61 VIAYNPFSSS PLLEVPQVSL DGGELNSMLD LFSVDNDDCL LFDDFDYHNE VRHPDGFVNK 120
  121 EAPVFLGDGN FSGMFDLSND QVVELQDLIQ SPTPHPPSPP AQASIPDDSR SNGQTKDD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle