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View Structure Prediction Details

Protein: gi|15227336, gi|...
Organism: Arabidopsis thaliana
Length: 547 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15227336, gi|....

Description E-value Query
Range
Subject
Range
gi|109465974 - gi|109465974|ref|XP_001070389.1| PREDICTED: similar to transportin 1 [Rattus norvegicus]
345.0 [0..14] [547..616]

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Predicted Domain #1
Region A:
Residues: [1-547]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYEDDDETL LNEEEWNLRA CSAKFIGILA NVFGDEILLT LMPLIEAKLS KFDDETWKER  60
   61 EAAVFAFGAI AEGCNSFFYP HLIVAILRRL LDDQSPLVRR ITCWTLYQFG TYVFEESNLE 120
  121 NSKLFTKVLH GFRFKLLDSN IWVQEAACLA LTTFEEDAGD KLVPHLEKIL QQLMRAFGKY 180
  181 QKRNLKVLLD AIRALADSVG INLNKRAYIK ILIPPLVSTL EQISNSDKDV IPLLKCFTSI 240
  241 SKALEVGFAP FSWYVFERCM DILQLQQLAK VDHDFAGVQY DQNIVVCSLE FFSGLSKGLV 300
  301 SGIESLVSQS NLRDMLLKCF MDETPDVRES AFALICHLTK SANFSGENLS AANNACKAIG 360
  361 ELAVKFLVKN KLVNDMNSMF QYPQEVSPIV TNVVYSLGMI IQLGETLELK SLTTLVEYNA 420
  421 IELAMNSAIT VGILARIRPD LSARSIENFM KPWCMRLATL DDDSTKENAF QGLCEMVKVN 480
  481 PSRYVSSVAF ICLAIASWKD MENKVIQSEF SKVLIGYKNM LGKNSWEECL SVLDPLAKER 540
  541 LAARYQV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.0
Match: 2ot8A
Description: No description for 2ot8A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle