YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15236426, gi\|...
Organism:	Arabidopsis thaliana
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15236426, gi|....

Description	E-value	Query Range	Subject Range
gi\|46229098, gi\|... - gi\|46229098\|gb\|EAK89947.1\| RAS small GTpases RIC1/ypt1 [Cryptosporidium parvum Iowa II], gi\|32398899... gi\|54658806 - gi\|54658806\|gb\|EAL37422.1\| small GTP binding protein rab1a [Cryptosporidium hominis] gi\|66475702 - gi\|66475702\|ref\|XP_627667.1\| RAS small GTpases RIC1/ypt1 [Cryptosporidium parvum Iowa II] gi\|67619548 - gi\|67619548\|ref\|XP_667653.1\| small GTP binding protein rab1a [Cryptosporidium hominis TU502]	153.0	[0..2]	[127..32]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLKDHVPK IMEKGEFDEI VDKEILNDLG GDDDLVLRRK PCGSSEGSCS SSNHEEEDGR  60
   61 SLMKERLQRW LRELRDHADS NIVIMMAGNK ADLNHLRSVA EEDGHKTESL SFLETSALEA 120
  121 TNVEKAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1oivA
Description:	X-ray structure of the small G protein Rab11a in complex with GDP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: