YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18399377, gi\|...
Organism:	Arabidopsis thaliana
Length:	472 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18399377, gi|....

Description	E-value	Query Range	Subject Range
TI441_ARATH - Mitochondrial import inner membrane translocase subunit TIM44-1 OS=Arabidopsis thaliana GN=TIM44-1 P...	289.0	[0..1]	[472..1]
gi\|218199472 - gi\|218199472\|gb\|EEC81899.1\| hypothetical protein OsI_25725 [Oryza sativa Indica Group] gi\|215686787, gi... - gi\|51978968\|ref\|XP_507361.1\| PREDICTED P0492E07.122 gene product [Oryza sativa (japonica cultivar-gr...	258.0	[0..1]	[472..1]
gi\|114675079 - gi\|114675079\|ref\|XP_512338.2\| PREDICTED: translocase of inner mitochondrial membrane 44 [Pan troglod...	234.0	[0..32]	[472..291]
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	210.0	[0..8]	[408..1771]
CG11779-PA - This gene is referred to in FlyBase by the symbol Dmel\CG11779 (CG11779, FBgn0038683). It is a prote...	199.0	[0..35]	[472..60]
gi\|63093891 - gi\|63093891\|dbj\|BAD98172.1\| hypothetical protein [Drosophila parabipectinata]	197.0	[0..35]	[472..61]
gi\|125773847, gi... - gi\|54637917\|gb\|EAL27319.1\| GA11194-PA [Drosophila pseudoobscura], gi\|125773847\|ref\|XP_001358182.1\| G...	189.0	[0..18]	[472..29]

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Predicted Domain #1

Region A:
Residues: [1-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRKIIRDL LITKQPLLRQ LFHQRRANAR SEFLPAIGYT SHRRFSVFTE FSKNIRGEAH  60
   61 SNPEFERTVK ELKERTEEFK GVTEDLKVRT KQTTEKLYKQ ADGVWTEAES AAKKVSSSVK 120
  121 DKLSAASEEV KESFKLGKEE NAESASSSGT RASQGEKQQS GSTEELHTFF AKFKSSLSSP 180
  181 KVSEVFYRLK EAKPFDIVKQ ALDIVKDELR GNPSRKKFLE HTPPPPFTGE RSMRTEMVVT 240
  241 QTKQSKLQQK WESFREKMQG SPVFKRLSGM SEPVVNKSQE IAEDVREIWE TSDNPIVHKI 300
  301 QDMNEKFLKE TDSASTYKEI RSRDPSFSLP DFAAEIEEVI KPVLNAYSEG DVETLKKYCS 360
  361 KEVIERCTAE RTAYQTHGVL FDNKLLHISE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [391-472]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSVSVTKMMG DSPIIIAKFQ TQEIYCVRDE NGEIQEGGQD TIHTVYHEWA MQQVETTELG  60
   61 EDAIYPIWRL REMCRNGVQA LI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	2cw9A
Description:	Crystal structure of human Tim44 C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits