| Protein: | NFXL1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1188 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NFXL1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
343.0 | [0..63] | [921..341] |
|
|
343.0 | [0..67] | [923..263] |
|
|
341.0 | [0..67] | [923..264] |
|
|
336.0 | [0..67] | [923..281] |
|
|
336.0 | [0..67] | [923..249] |
|
Region A: Residues: [1-143] |
1 11 21 31 41 51
| | | | | |
1 MSFQVRRDRS DDRSHRFNHQ QTWIPRNSST SSVVVNEPLL PPNTDRNSET LDAGSASRPV 60
61 YLQRQHNASG PPSYNHHQRS SNIGPPPPNQ HRRYNAPDNQ HQRSDNIGPP QPNQHRRYNA 120
121 PDNQHQRSDN SGPPQPYRHR RNN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [144-294] |
1 11 21 31 41 51
| | | | | |
1 APENQHQRSD NIGPPPPNRQ RRNNASGTLP DNRQRVASRT RPVNQGKRVA KEENVVLTDP 60
61 NLPQLVQELQ EKLVKSSIEC MICYDKVGRS ANIWSCSSCY SIFHINCIKR WARAPTSVDL 120
121 LAEKNQGDNW RCPGCQSVQL TSSKEISYRC F
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [295-659] |
1 11 21 31 41 51
| | | | | |
1 CGKRRDPPSD PYLTPHSCGE PCGKPLEKEF APAETTEEDL CPHVCVLQCH PGPCPPCKAF 60
61 APPRSCPCGK KMVTTRCSER RSDLVCGQRC DKLLSCGRHQ CERTCHVGPC DPCQVLVNAT 120
121 CFCKKKVETV ICGDMNVKGE LKAEDGVYSC SFNCGKPLGC GNHFCSEVCH PGPCGDCDLL 180
181 PSRVKTCYCG NTRLEEQIRQ SCLDPIPSCS NVCRKLLPCR LHTCNEMCHA GDCPPCLVQV 240
241 NQKCRCGSTS RAVECYITTS SEAEKFVCAK PCGRKKNCGR HRCSERCCPL LNGKKNDLSG 300
301 DWDPHVCQIP CQKKLRCGQH SCESLCHSGH CPPCLEMIFT DLTCACGRTS IPPPLSCGTP 360
361 VPSCQ
|
| Detection Method: | |
| Confidence: | 15.39794 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [660-752] |
1 11 21 31 41 51
| | | | | |
1 LPCPIPQPCG HSDTHGCHFG DCPPCSTPVE KKCVGGHVVL RNIPCGLKDI RCTKICGKTR 60
61 RCGMHACART CHPEPCDSFN ESEAGMRVTC RQK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [753-1005] |
1 11 21 31 41 51
| | | | | |
1 CGAPRTDCRH TCAALCHPSA PCPDLRCEFS VTITCSCGRI TATVPCDAGG RSANGSNVYC 60
61 AAYDEASVLQ KLPAPLQPVE SSGNRIPLGQ RKLSCDDECA KLERKRVLQD AFDITPPNLE 120
121 ALHFSENSAM TEIISDLYRR DPKWVLAVEE RCKFLVLGKA RGSTSALKVH IFCPMQKDKR 180
181 DTVRLIAERW KLGVSNAGWE PKRFTVVHVT AKSKPPTRII GARGGAISIG GPHPPFYDSL 240
241 VDMDPGLVVS FLD
|
| Detection Method: | |
| Confidence: | 4.0 |
| Match: | 2dtgE |
| Description: | No description for 2dtgE was found. |
|
Region A: Residues: [1006-1188] |
1 11 21 31 41 51
| | | | | |
1 LPREANISAL VLRFGGECEL VWLNDKNALA VFHDHARAAT AMRRLEHGSV YHGAVVVQSG 60
61 GQSPSLNNVW GKLPGSSAWD VDKGNPWRRA VIQESDDSWG AEDSPIGGSS TDAQASALRS 120
121 AKSNSPIVTS VNRWSVLEPK KASTSTLEPI AQIEESSSSK TTGKQPVEGS GEEVVDDWEK 180
181 VCE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
