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View Structure Prediction Details

Protein: CYC1A_ARATH
Organism: Arabidopsis thaliana
Length: 307 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYC1A_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593678 - gi|21593678|gb|AAM65645.1| cytochrome c, putative [Arabidopsis thaliana]
396.0 [0..1] [307..1]

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Predicted Domain #1
Region A:
Residues: [1-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST  60
   61 VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ QVCASCHSMS LISYRDLVGV 120
  121 AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS 180
  181 LITKARHNGP NYVFALLTGY RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG 240
  241 VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK 300
  301 LVLDVVN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 100.0
Match: 1ezvD
Description: Cytochrome bc1 domain; Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle