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View Structure Prediction Details

Protein: gi|10177121, gi|...
Organism: Arabidopsis thaliana
Length: 267 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|10177121, gi|....

Description E-value Query
Range
Subject
Range
gi|21537370 - gi|21537370|gb|AAM61711.1| putative prolyl 4-hydroxylase, alpha subunit [Arabidopsis thaliana]
327.0 [0..2] [266..1]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMARPRNHRP SARKSSHSTL VFAVLIMSTF VILILLAFGI LSVPSNNAGS SKANDLTSIV  60
   61 RKTLQRSGED DSKNERWVEI ISW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.881 d.109.1 Actin depolymerizing proteins

Predicted Domain #2
Region A:
Residues: [84-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPRASVYHNF LTKEECKYLI ELAKPHMEKS TVVDEKTGKS TDSRVRTSSG TFLARGRDKT  60
   61 IREIEKRISD FTFIPVEHGE GLQVLHYEIG QKYEPHYDYF MDEYNTRNGG QRIATVLMYL 120
  121 SDVEEGGETV FPAAKGNYSA VPWWNELSEC GKGGLSVKPK MGDALLFWSM TPDATLDPSS 180
  181 LHGE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.38
Match: 2hbtA
Description: No description for 2hbtA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle