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View Structure Prediction Details

Protein: UBC23_ARATH
Organism: Arabidopsis thaliana
Length: 1102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for UBC23_ARATH.

Predicted Domain #1
Region A:
Residues: [1-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHEQDDPGT STNVGVDSSV DDSMASLSIC DSEHPNIYRQ DIVKNKKTGS VGVVSEVAGD  60
   61 SDSDSDISDE EEDDDDDEDN DDDDEDVEEG KKASEENVVN GDGEKKADGN YKCGALEGDQ 120
  121 IRVLWMDNTE PVQDINDVTV IDRGFLHGDY VASASEPTGQ VGVVVDVNIS VDLLAPDGSI 180
  181 HKDISTKNLK RVRDFAVGDY VVHGPWLGRI DDVLDNVTVL FDDGSMCKVL RVEPLRLKPI 240
  241 PKNNLEEDAN FPYYPGQRVK ASSSSV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [267-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKNSRWLSGL WKPNRLEGTV TKVTAGSIFV YWIASAGFGP DSSVSPPEEQ NPSNLTLLSC  60
   61 FTHANWQVGD WCLLPSLNQS ATIPLHKHVS KLRLYDSQAD RQQKIGRDLE DVQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [380-445]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEVSGKVEPA GITAEALPKV TSDDPPQRNP SVSKEPVHEP WPLHRKKIRK LVIRKDKKVK  60
   61 KKEESF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [446-667]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQALLVVNSR TRVDVSWQDG TIECRREAIT LIPIETPGDH EFVSEQYVVE KTSDDGDNTT  60
   61 EPRRAGVVKN VNAKDRTASV RWLNPLRRAE EPREFEKEEI VSVYELEGHP DYDYCYGDVV 120
  121 VRLSPIAVAL PASSPGNSFE EATQQDNGYQ DSESHQEAKI LVDKEENEPS TDLSKLSWVG 180
  181 NITGLKDGDI EVTWADGTIS TVGPHAVYVV GRDDDDESVA GE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [668-799]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SETSDAASWE TLNDDDRGAP EIPEEDLGRS SSIEGNSDAD IYAENDSGRN GALALPLAAI  60
   61 EFVTRLASGI FSRARKSVDS SSSDYTVENV YKQAESTNPS DETDSLDDPS PSKVNVTDNC 120
  121 ESKGTQANAK NI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [800-1102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSGETSTFLE DEDKPVPSEG DSCSFRRFDI SQDPLDHHFL GVDGQKTKER QWFKKVDQDW  60
   61 KILQNNLPDG IFVRAYEDRM DLLRAVIVGA FGTPYQDGLF FFDFHLPSDY PSVPPSAYYH 120
  121 SGGWRLNPNL YEEGKVCLSL LNTWTGRGNE VWDPKSSSIL QVLVSLQGLV LNSKPYFNEA 180
  181 GYDKQVGTAE GEKNSLGYNE NTFLLNCKTM MYLMRKPPKD FEELIKDHFR KRGYYILKAC 240
  241 DAYMKGYLIG SLTKDASVID ERSSANSTSV GFKLMLAKIA PKLFSALSEV GADCNEFQHL 300
  301 QQQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.522879
Match: 3cegA
Description: No description for 3cegA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle