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View Structure Prediction Details

Protein: HMOX3_ARATH
Organism: Arabidopsis thaliana
Length: 285 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMOX3_ARATH.

Description E-value Query
Range
Subject
Range
HMOX4_ARATH - Heme oxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=HO4 PE=1 SV=1
339.0 [0..1] [285..1]
gi|14485579 - gi|14485579|gb|AAK63014.1|AF320030_1 heme oxygenase 1 [Pinus taeda]
325.0 [0..11] [285..41]
gi|14485569 - gi|14485569|gb|AAK63009.1|AF320025_1 heme oxygenase 3 [Glycine max]
315.0 [0..35] [285..1]
gi|26189984 - gi|26189984|emb|CAD34591.1| heme oxygenase [Ceratodon purpureus]
308.0 [0..4] [285..35]
gi|14485575 - gi|14485575|gb|AAK63012.1|AF320028_1 heme oxygenase 1 [Lycopersicon esculentum]
307.0 [0..52] [285..48]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTRLNPSC HFPASTRLSC ESYLGLRTTG RISYARTLTA PRGYLAVKAN GGQASVVTAA  60
   61 AITEKQQKKY P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.833 N/A N/A d.9.1 Interleukin 8-like chemokines
View Download 0.765 N/A N/A d.50.1 dsRNA-binding domain-like
View Download 0.765 N/A N/A d.50.1 dsRNA-binding domain-like
View Download 0.754 N/A N/A b.38.1 Sm-like ribonucleoproteins
View Download 0.751 N/A N/A d.17.2 Copper amine oxidase, domains 1 and 2
View Download 0.723 N/A N/A d.9.1 Interleukin 8-like chemokines
View Download 0.709 N/A N/A g.41.3 Zinc beta-ribbon
View Download 0.684 N/A N/A g.41.17 Description not found.
View Download 0.679 N/A N/A g.41.17 Description not found.
View Download 0.664 N/A N/A g.41.17 Description not found.
View Download 0.651 N/A N/A g.41.17 Description not found.
View Download 0.648 N/A N/A d.50.1 dsRNA-binding domain-like
View Download 0.639 N/A N/A g.41.3 Zinc beta-ribbon
View Download 0.625 N/A N/A g.41.17 Description not found.

Predicted Domain #2
Region A:
Residues: [72-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GESKGFVEEM RFVAMRLHTK DQAREGEKES RSPEEGPVAK WEPTVEGYLH FLVDSKLVYD  60
   61 TLEGIIDGSN FPTYAGFKNT GLERAESLRK DLEWFKEQGY EIPEPMAPGK TYSEYLKDLA 120
  121 ENDPQAFICH FYNIYFAHSA GGQMIGTKVS KKILDNKELE FYKWDGQLSQ LLQNVRQKLN 180
  181 KVAEWWTREE KSHCLEETEK SFKFSGEILR LILS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.522879
Match: 1we1A
Description: Crystal structure of heme oxygenase-1 from cyanobacterium Synechocystis sp. PCC6803 in complex with heme
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle