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View Structure Prediction Details

Protein: ORP1D_ARATH
Organism: Arabidopsis thaliana
Length: 816 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for ORP1D_ARATH.

Predicted Domain #1
Region A:
Residues: [1-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPLCCIAPV SIDDRTNPVV AKSSNHHLGL EAIPVSKHAS KPSFSTQASW ISQDQLERLS  60
   61 SEVVDDVNLD GKDASSSSNK GCFFFGNCVG AGAGVAGIMY KWVNYGKGWR ARWFELEDGV 120
  121 LSYYKIHGPD KIVMNPSREK GVRVIGEESV RYIRKASCGS SNRLGASAVA ASRPCKPFGE 180
  181 IHLKVSSIRA SKSDDKRLAI FTGTKTLHLR CVSKENRAAW VEAFQVAKDL FPRVAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.154902
Match: 2r0dA
Description: No description for 2r0dA was found.

Predicted Domain #2
Region A:
Residues: [237-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDILPSEDAV VSTEKLREKL LQEGVGETVV KDCEAIMLSE VSVLQNRLKV LTHKHIILLD  60
   61 TLRQLETEKI ELEATVVDET KEHDSCCGQG RRFSDFYSVM SEVSASDSEA DNESQDGADV 120
  121 ESDEDDVPYF DTNDILSAEA MRSASYRSRE AEGNGSIYDK DPFFSDRLQI PARIPQY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [414-816]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYVRRRDNLP EPKEKEKPVG LWSIIKENIG KDLSGVCLPV YFNEPLSSLQ KCFEDLEYSY  60
   61 LIDRALEWGK QGNELMRILN IAAFAVSGYA STEGRQCKPF NPLLGETYEA DYPDKGLRFF 120
  121 SEKVSHHPMI VACHCEGQGW NFWGDSNIKG KFWGRSIQLD PVGVLTLKFD DGEIYQWSKV 180
  181 TTSIYNIILG KLYCDHYGTM RIKGGSNYSC RLKFKEQSVI DRNPRQVHGF VQDNRTGEKV 240
  241 AILIGKWDEA MYYVLGDPTT KPKGYDPMTE AVLLWERDKS PTKTRYNLSP FAISLNEITP 300
  301 GMIDKLPPTD SRLRPDQRHL ENGEYESANA EKLRLEQLQR QARRLQEKGW KPRWFEKDEE 360
  361 GNYRYLGGYW EAREKKDWDR ITDIFKKQQQ RNSLSSSSSS TFL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.0
Match: 1zhtA
Description: Structure of yeast oxysterol binding protein Osh4 in complex with 7-hydroxycholesterol
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle