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View Structure Prediction Details

Protein: gi|110741863, gi...
Organism: Arabidopsis thaliana
Length: 375 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110741863, gi....

Description E-value Query
Range
Subject
Range
gi|21592304 - gi|21592304|gb|AAM64255.1| RNA polymerase subunit [Arabidopsis thaliana]
482.0 [0..1] [375..1]

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Predicted Domain #1
Region A:
Residues: [1-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTKAEKQFA KNFNIDDLPD VPAGLPPHLK AQQTRVVSKN NAPAHTASAI YSGTYVSSTE  60
   61 EDDNVKLGNF YDNFKVDVVS LTKTDMEFDM IGIDAAFANA FRRILIAEVP SMAIEKVLIA 120
  121 YNTSVIIDEV LAHRMGLIPI AADPRLFEYL SEHDQANEKN TIVFKLHVKC PKNRPRLKVL 180
  181 TSDLKWLPNG SELLRESENK TSKPKTYTSF SCSQDSLPEF ANNPITPCDL DILIAKLAPG 240
  241 QEIELEAHAV KGIGKTHAKW SPVGTAWYRM HPEVVLRGEV EDELAERLVN VCPQNVFDIE 300
  301 DMGKGKKRAT VAQPRKCTLC KECVRDDDLV DHVDLGSVKN HFIFNIESTG SLPPEVLFTE 360
  361 AVKILEAKCE AITDF

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Detection Method: PSI-BLAST
Confidence: 69.30103
Match: 1i3qC
Description: RPB3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle