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View Structure Prediction Details

Protein: SKP2B_ARATH
Organism: Arabidopsis thaliana
Length: 360 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKP2B_ARATH.

Description E-value Query
Range
Subject
Range
SKP2A_ARATH - F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1
183.0 [0..1] [360..1]

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Predicted Domain #1
Region A:
Residues: [1-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSEGATRKE LNLCFENMKM EGVLISEWKD IPVELLMKIL NLVDDRTVII ASCICSGWRD  60
   61 AVSLGLTRLS LSWCKKNMNS LVLSLAPKFV KLQTLVLRQD KPQLEDNAVE AIANHCHELQ 120
  121 DLDLSKSSKI TDHSLYSLAR GCTNLTKLNL SGCTSFSDTA LAHLTRFCRK LKILNLCGCV 180
  181 EAVSDNTLQA IGENCNQLQS LNLGWCENIS DDGVMSLAYG CPDLRTLDLC SCVLITDESV 240
  241 VALANRCIHL RSLGLYYCRN ITDRAMYSLA QSGVKNKHEM WRAVKKGKFD EEGLRSLNIS 300
  301 QCTYLTPSAV QAVCDTFPAL HTCSGRHSLV MSGCLNLQSV HCACILQAHR THTVYPHPAH 360
  361 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.39794
Match: 2p1mB
Description: No description for 2p1mB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle