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View Structure Prediction Details

Protein: 5MMP_ARATH
Organism: Arabidopsis thaliana
Length: 360 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for 5MMP_ARATH.

Description E-value Query
Range
Subject
Range
gi|114640111 - gi|114640111|ref|XP_001154066.1| PREDICTED: matrix metalloproteinase 3 isoform 3 [Pan troglodytes]
299.0 [0..27] [359..2]

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Predicted Domain #1
Region A:
Residues: [1-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLLLTILI FFFTVNPISA KFYTNVSSIP PLQFLNATQN AWETFSKLAG CHIGENINGL  60
   61 SKLKQYFRRF GYITTTGNCT DDFDDVLQSA INTYQKNFNL KVTGKLDSST LRQIVKPRCG 120
  121 NPDLIDGVSE MNGGKILRTT EKYSFFPGKP RWPKRKRDLT YAFAPQNNLT DEVKRVFSRA 180
  181 FTRWAEVTPL NFTRSESILR ADIVIGFFSG EHGDGEPFDG AMGTLAHASS PPTGMLHLDG 240
  241 DEDWLISNGE ISRRILPVTT VVDLESVAVH EIGHLLGLGH SSVEDAIMFP AISGGDRKVE 300
  301 LAKDDIEGIQ HLYGGNPNGD GGGSKPSRES QSTGGDSVRR WRGWMISLSS IATCIFLISV 360
  361 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.69897
Match: 1su3A
Description: X-ray structure of human proMMP-1: New insights into collagenase action
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
peptidase activity 5.33358263548929 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 4.99457783001146 bayes_pls_golite062009
endopeptidase activity 4.16532996235931 bayes_pls_golite062009
metallopeptidase activity 3.94798058866011 bayes_pls_golite062009
metalloendopeptidase activity 3.43236442601127 bayes_pls_golite062009
hydrolase activity 2.63109625301237 bayes_pls_golite062009
receptor binding 2.39767049122449 bayes_pls_golite062009
exopeptidase activity 2.07461908743946 bayes_pls_golite062009
binding 1.08558665967526 bayes_pls_golite062009
catalytic activity 0.891187593353827 bayes_pls_golite062009
growth factor activity 0.720944017870466 bayes_pls_golite062009
integrin binding 0.57684135424992 bayes_pls_golite062009
zinc ion binding 0.49304764842799 bayes_pls_golite062009
aminopeptidase activity 0.489265029264191 bayes_pls_golite062009
serine hydrolase activity 0.393080846858665 bayes_pls_golite062009
serine-type peptidase activity 0.374597710524442 bayes_pls_golite062009
protein binding 0.2751534129453 bayes_pls_golite062009
peptidyl-dipeptidase activity 0.27229268642689 bayes_pls_golite062009
serine-type endopeptidase activity 0.252655558968584 bayes_pls_golite062009
cytokine receptor binding 0.0255053415182105 bayes_pls_golite062009
ion binding 0.0127744064783182 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle