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View Structure Prediction Details

Protein: gi|7268369, gi|1...
Organism: Arabidopsis thaliana
Length: 288 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7268369, gi|1....

Description E-value Query
Range
Subject
Range
gi|73995017 - gi|73995017|ref|XP_852516.1| PREDICTED: similar to Splicing factor 3 subunit 1 (Spliceosome associat...
233.0 [0..69] [270..19]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSTLQSEQ SMEIITPPAD IGTRTLVDKA AQFVSKKGLE FETKIIDSYP TDAKFNFLRS  60
   61 TADPCHTYYK HKLAEYSSQN QDG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.221849
Match: 2dt6A
Description: No description for 2dt6A was found.

Predicted Domain #2
Region A:
Residues: [84-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATDESDIKIF HAPPNVTTTA IVETTSCLVS QFGSEFEMMV KDSNTDDARF NFLKSSEDPY  60
   61 NVLYKQKLDE YSLDPRDAYY QHKLAESISK YH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.09691
Match: 1x4oA
Description: Solution structure of SURP domain in splicing factor 4
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [176-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REATPKLVLP NLLQFRLVKE MTFEELDTVK VTAQFVAWYG DDFRGFLMER VMTEPQFEFM  60
   61 KATDYRFSFY NEFVVAYSQV LNPPKYLKDK LRGRAAYTVI GHLLITMSEE EIS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.522879
Match: 2dt7B
Description: No description for 2dt7B was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle