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View Structure Prediction Details

Protein: MBR1_ARATH
Organism: Arabidopsis thaliana
Length: 704 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBR1_ARATH.

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
180.0 [0..10] [655..1010]

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Predicted Domain #1
Region A:
Residues: [1-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS  60
   61 HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT HHFVGYGSEG RQTGLNGMMV 120
  121 DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS 180
  181 SVQAAGESSS GPASPFGGWG SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG 240
  241 ASSSLSLAT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [250-366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSQSSPNVTN HFGRTEQMFG SGGGRAVAAS AFHSTRNTDT LSRAGRRLNP RQPQESVAFS  60
   61 VSHGGTSVRP TGSLQQNLPL NSPFVDPPDV RSSSITSGSN TGENQTNIVH LPALTRN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [367-558]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IHQYAWDASF SSRASNPSGI GMPAERLGPQ WETPRSNQEQ PLFAPATDMR QPVHDLWNFA  60
   61 RGSPGSSVDS LFVPRAGPSS AIHTPQPNPT WIPPQNAPPH NPSRTSELSP WSLFPSIESP 120
  121 SASHGGPLPL LPAGPSVSSN EVTMPSSSNS RSHRSRHRRS GLLLERQNEL LHLRHIGRSL 180
  181 AADGNGRNQI IS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [559-640]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIRQVLHAMR RGENLRVEDY MVFDPLIYQG MTDMHDRHRE MRLDVDNMSY EELLALGERI  60
   61 GDVSTGLSEE VILKAMKQHK HT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [641-704]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA  60
   61 LKTP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 2ep4A
Description: No description for 2ep4A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle