YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RAG3D_ARATH
Organism: Arabidopsis thaliana
Length: 206 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAG3D_ARATH.

Description E-value Query
Range
Subject
Range
RAB7_PEA - Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1
212.0 [0..1] [206..1]

Back

Predicted Domain #1
Region A:
Residues: [1-206]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRRRVLLK VIILGDSGVG KTSLMNQFVN RKFSNQYKAT IGADFLTKEV QIDDRIFTLQ  60
   61 IWDTAGQERF QSLGVAFYRG ADCCVLVYDV NVMKSFDNLN NWREEFLIQA SPSDPENFPF 120
  121 VVLGNKTDVD GGKSRVVSEK KAKAWCASKG NIPYFETSAK EGFNVDAAFE CITKNAFKNE 180
  181 PEEEPYLPDT IDVAGGQQQR STGCEC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.39794
Match: 1vg0B
Description: The crystal structures of the REP-1 protein in complex with monoprenylated Rab7 protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle